I'll help...
karllovesmercedes wrote:I currently own a LWB 2.5TD GLS NH Pajero with a Manual transmission and the Super-Select transfer case. I am looking to swap in a 4D56T from a newer Triton and upgrading the drivetrain to cope with the torque. I am looking at a 3.5 V6 Manual as I have heard these are the strongest of the Gen 2s, and I have a few questions.
I wouldn't bother, I'd just put the engine in and be done with it. What are you planning on using it for? Hard off road? If you are going to still do it I'll answer below but you'll find the standard gear will be fine. Maybe a front diff if you want to later down the track using it hard.
karllovesmercedes wrote:1 - What components will need swapping? (Obviously the Diffs, but is the entire axle required? etc. )
Rear 3.5 has bigger diff's and axles. Front diff should be bigger as well. CV's should be the same.
karllovesmercedes wrote:2 - Will a 3.5V6 SWB drivetrain be fine provided a LWB driveshaft is used?
Yes, but the driveshaft's need altering, the long one will not fit the bigger transfer case
karllovesmercedes wrote:3 - What are the differences between the GDI and Non-GDI transmissions?
No idea but doubt there are any differences. Never seen a gdi manual anyway.
karllovesmercedes wrote:4 - Will the majority of IFS components remain the same bar diffs and axles?
Yes, all the other threads about how shit IFS on other jap 4WD's is not relevant to Mitsi IFS, they are well designed and strong.
karllovesmercedes wrote:5 - I know the 2.8TD has a factory body lift to clear the transmission, is this the same with the 3.5?
Yep
karllovesmercedes wrote:6 - Any recommendations on how to make the swap as simple as possible?
Yep, put the bigger engine in and drive it!!!
Do you have the donor vehicle? If so it makes more sense but I wouldn't go spending loads of money getting it, You will need to do a body lift on yours to fit the 3.5 gear.